015

rq turtle/ttl

What are the anatomical entities where the APOC1 Homo sapiens gene is not expressed, that is where is APOC1 absent?

Use at

• https://www.bgee.org/sparql/

PREFIX genex: <http://purl.org/genex#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
PREFIX orth: <http://purl.org/net/orth#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX up: <http://purl.uniprot.org/core/>

SELECT DISTINCT ?anat ?anatName WHERE {
    ?seq a orth:Gene ;
        rdfs:label "APOC1" ;
        genex:isAbsentIn ?anat ;
        orth:organism ?organism .
    ?anat a genex:AnatomicalEntity ;
        rdfs:label ?anatName .
    ?organism obo:RO_0002162  ?species .
    ?species a up:Taxon ;
        up:scientificName "Homo sapiens" .
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?anat"):::projected 
  v4("?anatName"):::projected 
  v3("?organism")
  v1("?seq")
  v5("?species")
  c7(["genex:AnatomicalEntity"]):::iri 
  c4(["APOC1"]):::literal 
  c11(["Homo sapiens"]):::literal 
  c2(["orth:Gene"]):::iri 
  c9(["up:Taxon"]):::iri 
  v1 --"a"-->  c2
  v1 --"rdfs:label"-->  c4
  v1 --"genex:isAbsentIn"-->  v2
  v1 --"orth:organism"-->  v3
  v2 --"a"-->  c7
  v2 --"rdfs:label"-->  v4
  v3 --"obo:RO_0002162"-->  v5
  v5 --"a"-->  c9
  v5 --"up:scientificName"-->  c11