17

rq turtle/ttl

Find genes having Uniprot xrefs in the group 6400at314295, along with their names fetched from Uniprot SPARQL endpoint

Use at

• https://sparql.orthodb.org/sparql/

PREFIX up: <http://purl.uniprot.org/core/>
PREFIX odbgroup: <http://purl.orthodb.org/odbgroup/>
PREFIX : <http://purl.orthodb.org/>

SELECT *
WHERE {
    ?gene a :Gene;
        :memberOf odbgroup:6400at314295 .
    ?gene :xref [a :Xref; :xrefResource ?xref] .
    ?xref a :Uniprot .
    SERVICE <https://sparql.uniprot.org/sparql> {
        ?xref a up:Protein ;
            up:recommendedName [up:fullName ?name] .
    }
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?gene"):::projected 
  v3("?name"):::projected 
  v2("?xref"):::projected 
  a1((" "))
  a2((" "))
  c8([":Uniprot"]):::iri 
  c5([":Xref"]):::iri 
  c2([":Gene"]):::iri 
  c4([":odbgroup/6400at314295"]):::iri 
  c10(["up:Protein"]):::iri 
  v1 --"a"-->  c2
  v1 --":memberOf"-->  c4
  a1 --"a"-->  c5
  a1 --":xrefResource"-->  v2
  v1 --":xref"-->  a1
  v2 --"a"-->  c8
  subgraph s1["https://sparql.uniprot.org/sparql"]
    style s1 stroke-width:4px;
    v2 --"a"-->  c10
    a2 --"up:fullName"-->  v3
    v2 --"up:recommendedName"-->  a2
  end