2

rq turtle/ttl

Find all clades, i.e. taxonomic levels where orthologous groups were built on, with their Latin names and ranks underneath Bacteria, sorted alphabetically by rank, then name

Use at

• https://sparql.orthodb.org/sparql/

PREFIX up: <http://purl.uniprot.org/core/>
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX : <http://purl.orthodb.org/>

SELECT * WHERE {
    ?taxon a :Clade ;
        rdfs:subClassOf+ taxon:2 ;
        up:scientificName ?name ;
        up:rank ?rank .
} ORDER BY ?rank ?name

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v2("?name"):::projected 
  v1("?rank"):::projected 
  v3("?taxon"):::projected 
  c4(["taxon:2"]):::iri 
  c2([":Clade"]):::iri 
  v3 --"a"-->  c2
  v3 --"rdfs:subClassOf"-->  c4
  v3 --"up:scientificName"-->  v2
  v3 --"up:rank"-->  v1