NXQ_00053

rq turtle/ttl

• function
• method
• tutorial

Proteins which are involved in cell adhesion according to GO with an evidence which is not used in automatic assertion nor a sequence similarity evidence used in manual assertion

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX nextprot_cv: <http://nextprot.org/rdf/terminology/>

SELECT DISTINCT ?entry WHERE {
 ?entry :isoform/:function ?statement.
 ?statement :term / :childOf nextprot_cv:GO_0007155.
 filter not exists { ?statement :negativeEvidence ?negev. } # No negative function evidence
 ?statement :evidence/:evidenceCode ?ecode.
 filter not exists { ?ecode :childOf nextprot_cv:ECO_0000501. } # Automatic assertion
 filter not exists { ?ecode :childOf nextprot_cv:ECO_0000250. } # Sequence similarity evidence used in manual assertion
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?ecode")
  v4("?entry"):::projected 
  v3("?negev")
  v2("?statement")
  a1((" "))
  a2((" "))
  a3((" "))
  c2([":terminology/ECO_0000250"]):::iri 
  c3([":terminology/ECO_0000501"]):::iri 
  c8([":terminology/GO_0007155"]):::iri 
  f0[["not  "]]
  subgraph f0e0["Exists Clause"]
    e0v1 --":childOf"-->  e0c2
    e0v1("?ecode"):::projected 
    e0c2([":terminology/ECO_0000250"]):::iri 
  end
  f0--EXISTS--> f0e0
  f0 --> v1
  f0 --> c1
  f0 --> c2
  v1 --":childOf"-->  c2
  f1[["not  "]]
  subgraph f1e1["Exists Clause"]
    e1v1 --":childOf"-->  e1c2
    e1v1("?ecode"):::projected 
    e1c2([":terminology/ECO_0000501"]):::iri 
  end
  f1--EXISTS--> f1e1
  f1 --> v1
  f1 --> c1
  f1 --> c3
  v1 --":childOf"-->  c3
  f2[["not  "]]
  subgraph f2e2["Exists Clause"]
    e2v1 --":negativeEvidence"-->  e2v2
    e2v2("?negev"):::projected 
    e2v1("?statement"):::projected 
  end
  f2--EXISTS--> f2e2
  f2 --> v2
  f2 --> c4
  f2 --> v3
  v2 --":negativeEvidence"-->  v3
  v4 --":isoform"-->  a1
  a1 --":function"-->  v2
  v2 --":term"-->  a2
  a2 --":childOf"-->  c8
  v2 --":evidence"-->  a3
  a3 --":evidenceCode"-->  v1