NXQ_09282

rq turtle/ttl

• QC
• evidence
• ECO
• expression

Check there are no entries with expression profile annotations from HPA for which the evidence code is NOT immunohistochemistry evidence, RNA-seq evidence or single-cell RNA-sequencing evidence

Use at

• https://sparql.nextprot.org/sparql

PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry where {
  ?entry :isoform /:expressionProfile /:evidence ?ev1.
  ?ev1 :assignedBy source:Human_protein_atlas.
  ?ev1 :evidenceCode ?eco.
  filter (?eco not in (cv:ECO_0001055,cv:ECO_0000295,cv:ECO_0001560))
}

graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v1("?eco")
  v2("?entry"):::projected 
  v3("?ev1")
  a1((" "))
  a2((" "))
  c8([":source/Human_protein_atlas"]):::iri 
  f0[["?eco != ':terminology/ECO_0001055'?eco != ':terminology/ECO_0000295'?eco != ':terminology/ECO_0001560'"]]
  f0 --> v1
  v2 --":isoform"-->  a1
  a1 --":expressionProfile"-->  a2
  a2 --":evidence"-->  v3
  v3 --":assignedBy"-->  c8
  v3 --":evidenceCode"-->  v1