@prefix ex:<https://purl.expasy.org/sparql-examples/neXtProt/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .
ex:NXQ_09368 a sh:SPARQLExecutable, sh:SPARQLSelectExecutable ;
  sh:prefixes _:sparql_examples_prefixes ;
  rdfs:comment '''Check there are no entries with peptide mapping annotations with evidence from neXtProt that is negative'''@en ;
  schema:keywords "QC", "evidence", "negative", "proteomics", "peptide" ;
  schema:target <https://sparql.nextprot.org/sparql> ;
  sh:select '''PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry where {
  ?entry :isoform ?iso.
  ?iso :peptideMapping /:evidence ?ev.
  ?ev :assignedBy ?src.
  filter ( ?src not in (source:PeptideAtlas_human_adrenal_gland,
source:PeptideAtlas_human_brain,
source:PeptideAtlas_human_breast,
source:PeptideAtlas_human_digestive_system,
source:PeptideAtlas_human_eye,
source:PeptideAtlas_human_female_reproductive_system,
source:PeptideAtlas_human_heart,
source:PeptideAtlas_human_kidney,
source:PeptideAtlas_human_liver,
source:PeptideAtlas_human_lung,
source:PeptideAtlas_human_male_reproductive_system,
source:PeptideAtlas_human_others,
source:PeptideAtlas_human_pancreas,
source:PeptideAtlas_human_plasma,
source:PeptideAtlas_human_spleen,
source:PeptideAtlas_human_urinary_bladder,
source:PeptideAtlas_human_urine,
source:PeptideAtlas_human_phosphoproteome))
  ?ev :negative 1.
}''' .