@prefix ex:<https://purl.expasy.org/sparql-examples/neXtProt/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .
ex:NXQ_09369 a sh:SPARQLExecutable, sh:SPARQLSelectExecutable ;
  sh:prefixes _:sparql_examples_prefixes ;
  rdfs:comment '''Check there are no entries with peptide mapping annotations with evidence from PeptideAtlas that is negative'''@en ;
  schema:keywords "QC", "evidence", "negative", "proteomics", "peptide" ;
  schema:target <https://sparql.nextprot.org/sparql> ;
  sh:select '''PREFIX : <http://nextprot.org/rdf/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX source: <http://nextprot.org/rdf/source/>

select distinct ?entry where {
  ?entry :isoform ?iso.
  ?iso :peptideMapping /:evidence ?ev.
  ?ev :assignedBy ?src.
  filter ( ?src not in (source:MDATA_0004_2011,
source:MDATA_0023_2012,
source:MDATA_0033_2013,
source:PMID_20797634,
source:PMID_20140087,
source:PMID_20570859,
source:PMID_20687582,
source:PMID_20972266,
source:PMID_21139048,
source:PMID_21645671,
source:PMID_21890473,
source:PMID_22148984,
source:PMID_22865923,
source:PMID_23236377,
source:PMID_23266961,
source:PMID_23584533,
source:PMID_23955771,
source:PMID_24129315,
source:PMID_25038526,
source:PMID_25218447))
  ?ev :negative 1.
}''' .